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J Mol Evol ; 89(6): 341-356, 2021 07.
Article in English | MEDLINE | ID: covidwho-1227833

ABSTRACT

Severe Acute Respiratory Syndrome Coronavirus-2 is a zoonotic virus with a possible origin in bats and potential transmission to humans through an intermediate host. When zoonotic viruses jump to a new host, they undergo both mutational and natural selective pressures that result in non-synonymous and synonymous adaptive changes, necessary for efficient replication and rapid spread of diseases in new host species. The nucleotide composition and codon usage pattern of SARS-CoV-2 indicate the presence of a highly conserved, gene-specific codon usage bias. The codon usage pattern of SARS-CoV-2 is mostly antagonistic to human and bat codon usage. SARS-CoV-2 codon usage bias is mainly shaped by the natural selection, while mutational pressure plays a minor role. The time-series analysis of SARS-CoV-2 genome indicates that the virus is slowly evolving. Virus isolates from later stages of the outbreak have more biased codon usage and nucleotide composition than virus isolates from early stages of the outbreak.


Subject(s)
COVID-19/epidemiology , COVID-19/virology , Codon Usage/genetics , Evolution, Molecular , Host-Pathogen Interactions/genetics , SARS-CoV-2/genetics , SARS-CoV-2/physiology , Adaptation, Physiological/genetics , Animals , COVID-19/transmission , Chiroptera/genetics , Genome, Viral/genetics , Humans , Mutation , Pandemics , Principal Component Analysis , Selection, Genetic/genetics , Time Factors , Virus Replication
3.
Cancer Treat Res Commun ; 26: 100285, 2021.
Article in English | MEDLINE | ID: covidwho-1023520

ABSTRACT

The SARS-CoV-2 (COVID-19) pandemic has particularly serious consequences for cancer patients, as they are at high risk for severe complications and mortality due to the virus since cancer patients are immunocompromised. Preliminary evidence suggests that patients with hematological, and metastatic malignancies are particularly susceptible to developing severe COVID-19 illness, which leads to poor prognosis. Biomarkers including C-reactive protein and interleukin-6 may be predictors of outcome and, therefore, crucial in assessing COVID-19 illness severity in cancer patients. A patient-specific risk and benefit inventory should be completed, and expert guidelines consulted when deciding to continue or postpone therapeutic interventions. This review presents preliminary evidence of COVID-19 infection and its impact on cancer, as well as discussion of general guidelines for the treatment and management of cancer patients with COVID-19.


Subject(s)
COVID-19/epidemiology , Neoplasms/epidemiology , Biomarkers/blood , Humans , Risk Factors
4.
Chinese Journal of Hepatology ; (12): E001-E001, 2020.
Article in Chinese | WPRIM (Western Pacific), WPRIM (Western Pacific) | ID: covidwho-2261

ABSTRACT

The outbreak of novel coronavirus pneumonia(NCP) caused by 2019 novel coronavirus has become a global public health challenge. Some patients accompany with liver function damage in addition to the main typical respiratory symptom. Here we analyzed the clinical features, susceptible population, potential causes and therapeutic strategies of NCP related liver injury.

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